Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 3596
Gene Symbol: IL13
IL13
0.100 Biomarker disease LHGDN [Interleukin 13 and interleukin 13 receptor involvement in systemic sclerosis]. 17543424 2007
Entrez Id: 10456
Gene Symbol: HAX1
HAX1
0.020 AlteredExpression disease LHGDN [HAX-1 protein: multifunctional factor involved in apoptosis, cell migration, endocytosis and mRNA transport]. 18399350 2007
Entrez Id: 1906
Gene Symbol: EDN1
EDN1
0.100 AlteredExpression disease LHGDN [Assessment of plasma endothelin level measurement in systemic sclerosis]. 17291632 2007
Entrez Id: 4088
Gene Symbol: SMAD3
SMAD3
0.100 PosttranslationalModification disease BEFREE Yiqihuoxue treatment could effectively reduce collagen production via down-regulating the phosphorylation of Smad3 and then the activity of SBE, which are involved in the TGF-β pathway and constitutively activated in the progression of SSc. 24998426 2014
Entrez Id: 8743
Gene Symbol: TNFSF10
TNFSF10
0.020 AlteredExpression disease BEFREE Within the largest groups of genes related to cell-cell interaction and vascular remodeling, down-regulation of tumor necrosis factor ligand superfamily member 10 (TNFSF10) and homeobox A9 (HOX-A9) was confirmed by real-time polymerase chain reaction and Western blots in EPC-derived cells and by immunohistochemistry in SSc skin tissue. 21769840 2011
Entrez Id: 5743
Gene Symbol: PTGS2
PTGS2
0.030 AlteredExpression disease BEFREE Within the largest group of genes related to the inflammatory response, differential expression of TNFα-induced protein 3 and prostaglandin-endoperoxide synthase 2 was observed in EPC-derived cells and skin tissue from patients with SSc. 21769840 2011
Entrez Id: 7128
Gene Symbol: TNFAIP3
TNFAIP3
0.170 AlteredExpression disease BEFREE Within the largest group of genes related to the inflammatory response, differential expression of TNFα-induced protein 3 and prostaglandin-endoperoxide synthase 2 was observed in EPC-derived cells and skin tissue from patients with SSc. 21769840 2011
Entrez Id: 4855
Gene Symbol: NOTCH4
NOTCH4
0.120 GeneticVariation disease BEFREE Within the HLA region, HLA-DQB1, HLA-DPA1/B1, and NOTCH4 associations with SSc are likely confined to specific auto-antibodies. 21779181 2011
Entrez Id: 3119
Gene Symbol: HLA-DQB1
HLA-DQB1
0.400 GeneticVariation disease BEFREE Within the HLA region, HLA-DQB1, HLA-DPA1/B1, and NOTCH4 associations with SSc are likely confined to specific auto-antibodies. 21779181 2011
Entrez Id: 221895
Gene Symbol: JAZF1
JAZF1
0.110 GeneticVariation disease BEFREE With these, we add three (KIAA0319L, PXK and JAZF1) and one (KIAA0319L) new susceptibility loci for SSc and SLE, respectively, increasing significantly the knowledge of the genetic basis of autoimmunity. 23740937 2013
Entrez Id: 54899
Gene Symbol: PXK
PXK
0.120 GeneticVariation disease BEFREE With these, we add three (KIAA0319L, PXK and JAZF1) and one (KIAA0319L) new susceptibility loci for SSc and SLE, respectively, increasing significantly the knowledge of the genetic basis of autoimmunity. 23740937 2013
Entrez Id: 79932
Gene Symbol: KIAA0319L
KIAA0319L
0.110 GeneticVariation disease BEFREE With these, we add three (KIAA0319L, PXK and JAZF1) and one (KIAA0319L) new susceptibility loci for SSc and SLE, respectively, increasing significantly the knowledge of the genetic basis of autoimmunity. 23740937 2013
Entrez Id: 7432
Gene Symbol: VIP
VIP
0.010 Biomarker disease BEFREE With the knowledge that VIP modulates monocyte function through vasoactive intestinal peptide receptors (VPAC) and that immune homeostasis maintenance depends strongly upon a rapid and immunosuppressant apoptotic cell clearance by monocytes/macrophages, in this study we explored VPAC expression on monocytes from primary SS (pSS) patients and the ability of VIP to modulate apoptotic cell phagocytic function and cytokine profile. 24827637 2014
Entrez Id: 1499
Gene Symbol: CTNNB1
CTNNB1
0.020 Biomarker disease BEFREE WIF-1 deficiency in SSc patient cells correlated with increased abundance of the Wnt effector β-catenin and the production of collagen. 25185156 2014
Entrez Id: 3596
Gene Symbol: IL13
IL13
0.100 Biomarker disease BEFREE While the causes of fibrosis in scleroderma are unknown, cytokines such as TGF-beta, IL-4 and IL-13, play a crucial role in the stimulation of collagen production have been implicated in the disease process. 16380822 2005
Entrez Id: 3565
Gene Symbol: IL4
IL4
0.100 Biomarker disease BEFREE While the causes of fibrosis in scleroderma are unknown, cytokines such as TGF-beta, IL-4 and IL-13, play a crucial role in the stimulation of collagen production have been implicated in the disease process. 16380822 2005
Entrez Id: 3552
Gene Symbol: IL1A
IL1A
0.100 GeneticVariation disease BEFREE While meta-analysis showed there was no significant association between IL-1A -889C/T polymorphism and SSc, for IL-1B -511C/T (rs16944), significant associations were found in the comparison of allele C versus T (OR 1.267, 95 % CI 1.016-1.580) by combined different outcomes. 27098064 2016
Entrez Id: 3603
Gene Symbol: IL16
IL16
0.020 Biomarker disease BEFREE While levels of interleukin-1alpha (IL-1alpha) and IL-16 were among 10 proteins found to be significantly elevated in scleroderma patients, none of the large panel of plasma cytokines we analyzed correlated with the expression levels of putative IFN response genes. 18438864 2008
Entrez Id: 51633
Gene Symbol: OTUD6B
OTUD6B
0.010 AlteredExpression disease BEFREE While no difference was recorded at the basal level between HC and SSc dermal Fb, the expression of OTUD6B-AS1 and OTUD6B was significantly downregulated in both SSc and HC dermal Fb after PDGF stimulation in a time-dependent manner. 31156645 2019
Entrez Id: 100506365
Gene Symbol: OTUD6B-AS1
OTUD6B-AS1
0.010 AlteredExpression disease BEFREE While no difference was recorded at the basal level between HC and SSc dermal Fb, the expression of OTUD6B-AS1 and OTUD6B was significantly downregulated in both SSc and HC dermal Fb after PDGF stimulation in a time-dependent manner. 31156645 2019
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.100 Biomarker disease BEFREE Whether TNF antagonist is effective for SSc patients needs to be tested. 28562527 2017
Entrez Id: 22915
Gene Symbol: MMRN1
MMRN1
0.070 AlteredExpression disease BEFREE Whereas, Yiqihuoxue treatment could obviously attenuate fibrosis in bleomycin-induced mice, down regulate ECM gene expressions and collagen production in SSc dermal fibroblasts and TGF-β1-induced NIH/3T3 fibroblasts. 24998426 2014
Entrez Id: 26039
Gene Symbol: SS18L1
SS18L1
0.100 Biomarker disease BEFREE When these preparations are incubated with anticentromere serum from a human CREST scleroderma patient and then with rhodamine-conjugated antihuman IgG, fluorescence appears in the form of paired dots, the same pattern found in whole metaphase chromosomes. 6309483 1983
Entrez Id: 958
Gene Symbol: CD40
CD40
0.050 Biomarker disease BEFREE When the cells from the twins were mixed in different combinations, T cells from the healthy twin did stimulate the SSc patient's B cells to produce anti-topo I antibody through a CD40-dependent mechanism. 11465716 2001
Entrez Id: 8830
Gene Symbol: PTLAH
PTLAH
0.010 Biomarker disease BEFREE When matched for PVR, left atrial volume was lower in SSc-PAH than in IPAH/FPAH, consistent with left-sided underfilling, indicating a potential differentiator between the groups. 29916558 2018